MmuEX6056372 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99057412-99059147:+
Coord C1 exon
chr15:99057412-99057546
Coord A exon
chr15:99058340-99058473
Coord C2 exon
chr15:99058904-99059147
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGAACCCTCTTTTCTTGTAGGCG
3' ss Score
7.86
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
GCGGTGGCCGGCGCCGATATGGTCGGGCCGGATCCAAAGGCTTCAATGCCAATCGGAGGCGGAGCCGGGCAGTTCTCTACCACCTCTCTGGCCATCTGCAGAAGCAACCCAAGGGCAAGCACAAGCTCAATAAG
Seq C2 exon
GGAGTGTTTGGAGAGAAGCCAAATTTGCCTGAATATAAAGTCGCTGCTATCCGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTTGCCACACTCTACGTGGCAGTCACTGTGCCATACAGTGTGTGTGTGAGCACAGCACGGGAACCCAGTGCTGCCCGTGGCCCACCTAGTGTCTGTGACCTGGCTGTGGAGGTCCTCTTCATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.333 C2=0.012
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.6=73.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(4.8=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGACAACTGGAAGGAGA
R:
AGCCAGGTCACAGACACTAGG
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: