BtaEX6021160 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32697065-32703690:+
Coord C1 exon
chr5:32697065-32697338
Coord A exon
chr5:32697815-32698027
Coord C2 exon
chr5:32703637-32703690
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCGTCCTCTTCCCATCACAGGTG
3' ss Score
10.54
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAGGCTCGGGGTTCCTTGTCGCTGGGGGCTGGGGTGACGTTGTCCCCCCACCAAGTCCCCAGTTCTCCCCCAACCCGAGAGGAGCCTTTCCACCCAGCCTGGCTGGGGCTGCCTTGGAAGCGGCTCCAGCTACGAATTGGTCGGCTCACTTCTCCTGGGACTTACAGGCCGGGGGCACACAGTGGCTCGTTGTGGGGCGGGCGGGTGCTCCCGCCACCCCTTGCCTTCTGCTAGAGCCTGCAGGGCTGTGCGAGCTTGAAGGAGGAACATGAAG
Seq A exon
GTGGGCTGGCCAGGTGAGGGCCGCTGGCAGGTGGGCCTGGCTGTAGAGGGCGACTCGATTCTGGGAGCACCGCCGTTGGGAGGCCTCCCGGACGTGGTGCCGGAGGGGACGCTGCTCAACATGGTGCTCAGGAGGATGTATCGGTCCCGAAGCTGCTCCTACCAGCTGCTGCTCGAACACCAGCGCCCCAGCTGCATCCAGGGGCTGCGCTGG
Seq C2 exon
ACGCCACTCACCAGCAGCGAGGAGTCCCTGGATTTCAGTGTGAGCCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGGTTCCTTGTCGCT
R:
GAAATCCAGGGACTCCTCGCT
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]