RnoEX6033804 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139248463-139254551:-
Coord C1 exon
chr7:139254546-139254551
Coord A exon
chr7:139253908-139254120
Coord C2 exon
chr7:139248463-139248516
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCCCCCCATCACAGGTC
3' ss Score
10.87
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGAAG
Seq A exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGCTGAAGAGAATGCACCGTCCCCGGTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCAAGCTGCATCCAGGGACTTCGCTGG
Seq C2 exon
ACGCCACTTACCAACAGTGAGGGCTCCCTGGACTTCAGAGTGAGCCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'0-9,'0-1,3-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000083182fB12149
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]