DreEX0007299 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6705449-6737236:+
Coord C1 exon
chr6:6705449-6705537
Coord A exon
chr6:6718821-6718967
Coord C2 exon
chr6:6737164-6737236
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTCCCTTTTTCCAGGAT
3' ss Score
11.16
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TGTATCGACAGGGTGACATCGGCACCAGCTGGTACGCCGTTCTGTCTGGATCTCTGGACGTCAAAGTGTCTGAAACAGCCAACCATCAG
Seq A exon
GATGCTGTAACAATCTGTACTTTGGGAGTGGGAACAGCATTCGGGGAGTCAATTCTGGACAACACTCCTCGACATGCCACGATTGTCAGCCGAGAGAACAGTGAACTTCTGCGCATCGAGCAGAGGGAGTTCAAAACCCTGTGGGAG
Seq C2 exon
AAATACAGGCAGTGCATGGCAGGGCTTCTTGCTCCGCCGTATGGAGTGATGGACAGTGGAGCGACTAATGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.240
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCGACAGGGTGACATCG
R:
TATCATTAGTCGCTCCACTGTCCA
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]