MmuEX0038781 @ mm10
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97761679-97767846:-
Coord C1 exon
chr15:97767395-97767846
Coord A exon
chr15:97766762-97766974
Coord C2 exon
chr15:97761679-97761732
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCCCCACATCACAGGTC
3' ss Score
9.01
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGGGTAGGGACTCCATCAGCTGTTGGTTCTGCCCCTTCCCCTATGCCCACCCCTACCGTAAAGCTCGTGCCTGCTCCCCGCCCCCTCGGCCTGTCCGGGGAGGGGAAGGGGCGGGCAGCGCAGGGGGTGTGACAGCTCCCGCCCGGACCAGTGCCAGCTGCAGCTTCGCTTGAACGCCCTGTGCCAGCTGGCTCTTACATCTGGGACGGAGGCGGAGGCTTGGAGTTCTTAGCCTTTGGGAAGGGGTGGGGGCTGCCCCACACCCCCAGCCCTCTATTCACCCAGGACAAACCCTATCTGCCTAGCCCTGCATCTTGCTGCTCCAGGCAACCTGTCTGACTAGGGGCTGGCCCTTCGCTGCATCTCGGGACTCACACTCATACCGCTCCAGGGATCCTGCAGCCTCTTGCTAGGGCGAGCACCGCGGTGTGAGCTGGAGAAGAAACATGAAG
Seq A exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGTTGAAGAGAATGCACCGTCCCCGCTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCCAGCTGCATCCAGGGACTCCGCTGG
Seq C2 exon
ACACCACTTACCAACAGCGAGGACTCCCTGGATTTCAGAGTGAGTCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-'2-15,'2-10,7-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCTCTTACATCTGGG
R:
GTCCTCGCTGTTGGTAAGTGG
Band lengths:
292-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types