BtaEX6022783 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67774489-67778879:+
Coord C1 exon
chr5:67774489-67774608
Coord A exon
chr5:67775383-67775523
Coord C2 exon
chr5:67778772-67778879
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCCTCTCCTCTTAGACC
3' ss Score
10.85
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAAGTGCTGGTGTATTCCAACAGCTCAGCCAGAGGCCGGGCATTCCTGAAACACCTGACTGACCTGTCAATCCGAAGCACCCTCTTTGTGCCCCAGAACGGTGGGCTCGGGGAAAACGAG
Seq A exon
ACCCTGTCTGGGCGGGACATAGAGCACCACCTCTCCAACATCAACATCTTTTTTTACAATGACCTTGTCAATGGTACCATCGTGCACACGAGGCTGGGAAGCCAGCTGCTCATCACCTCCAGCCAGGACCAGCGCCAACTG
Seq C2 exon
GAGACCAGGTTCGTGGATGGAAGAGCCATTCTGCAGTGGGACATCTTTGCCTCCAATGGAATTATTCATGTCATTTCCAAGCCTTTAAAAGCTCCCTCTATCCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'71-73,'71-72,72-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(32.2=95.0)
A:
PF0246917=Fasciclin=FE(39.0=100)
C2:
PF0246917=Fasciclin=PD(26.3=86.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCTGGTGTATTCCAACA
R:
CCTGGGATAGAGGGAGCTTTT
Band lengths:
227-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]