MmuEX6050480 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86846868-86849053:-
Coord C1 exon
chr10:86848934-86849053
Coord A exon
chr10:86848025-86848165
Coord C2 exon
chr10:86846868-86846975
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTTGTTTCTCTTAGAGC
3' ss Score
9.58
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
GAGGTGCTGGTTTTTTCCAGGAGCTCAGCCCAAGGCCGGGCGTTTTTGAAACACCTGACTGACCTGTCCATCAGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGAAAAATAAG
Seq A exon
AGCCTGTCTGGGCGGGACATTGAGCACCACCTCACTAATGTCAACGTCTCCTTTTACGATGACCTTGTCAATGGTACCGTCCTGAAGACTAGGCTGGGAAGCCAACTGCTCATCACCTCCAGCCAGGACCAGCTCCACCAA
Seq C2 exon
GAGGCCAGGTTCGTGGATGGAAGAGCCATTCTGCAGTGGGACATCATTGCCTCTAACGGGGTTCTCCATATCATTTCTGAACCTTTGAAAGCTCCTCCCACGGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'95-104,'95-103,97-104=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(30.4=87.5)
A:
PF0246917=Fasciclin=FE(40.0=100)
C2:
PF0246917=Fasciclin=PD(27.0=86.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCAGGAGCTCAGCCCAA
R:
CGTGGGAGGAGCTTTCAAAGG
Band lengths:
210-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types