Special

MmuEX6050480 @ mm9

Exon Skipping

Gene
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86309613-86311798:-
Coord C1 exon
chr10:86311679-86311798
Coord A exon
chr10:86310770-86310910
Coord C2 exon
chr10:86309613-86309720
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTTGTTTCTCTTAGAGC
3' ss Score
9.58
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
GAGGTGCTGGTTTTTTCCAGGAGCTCAGCCCAAGGCCGGGCGTTTTTGAAACACCTGACTGACCTGTCCATCAGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGAAAAATAAG
Seq A exon
AGCCTGTCTGGGCGGGACATTGAGCACCACCTCACTAATGTCAACGTCTCCTTTTACGATGACCTTGTCAATGGTACCGTCCTGAAGACTAGGCTGGGAAGCCAACTGCTCATCACCTCCAGCCAGGACCAGCTCCACCAA
Seq C2 exon
GAGGCCAGGTTCGTGGATGGAAGAGCCATTCTGCAGTGGGACATCATTGCCTCTAACGGGGTTCTCCATATCATTTCTGAACCTTTGAAAGCTCCTCCCACGGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'70-76,'70-75,71-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.067 A=0.000 C2=0.056
Domain overlap (PFAM):

C1:
PF0246917=Fasciclin=PU(30.4=87.5)
A:
PF0246917=Fasciclin=FE(40.0=100)
C2:
PF0246917=Fasciclin=PD(27.0=86.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCAGGAGCTCAGCCCAA
R:
CGTGGGAGGAGCTTTCAAAGG
Band lengths:
210-351
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]