Special

GgaEX7000570 @ galGal4

Exon Skipping

Gene
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54930442-54932776:-
Coord C1 exon
chr1:54932657-54932776
Coord A exon
chr1:54931630-54931788
Coord C2 exon
chr1:54930442-54930549
Length
159 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTTTTGATTTTCAGACA
3' ss Score
8.71
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
AAAATCATGGCTTACTCCAACAGCTCTCGGAAAGGGAGAGCATTCCTGCGGTACCTCACCGACCTGTCAGTGCGTGCCACACTCTTCGCTCCAAATGACAGTGGACTAAGGGAAAATCAG
Seq A exon
ACACTTTCCGGTCGAGACATTGAGTATCATTTATCTAATGCCAGTATCATGTTTTACGAAGACTTGACCAATGGAACCACTCTCCTGACTCGTCTCGGGGAAAAACTCCTAATTACAGACAACGGGGGAAAAGAATACCAAGCTCCTTCCACTGAACAG
Seq C2 exon
ACTGAGACCAGATACGTGGATGGAAGTGCTATTGTTGAGTGGGATATAGTCGCTTCCAATGGGATAATCCATGTCATTTCAGAGCCTCTGAGGGCTCCGCCAGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'73-76,'73-75,75-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.208 C2=0.056
Domain overlap (PFAM):

C1:
PF0246917=Fasciclin=FE(28.7=100)
A:
PF0246917=Fasciclin=FE(38.2=100)
C2:
PF0246917=Fasciclin=PD(23.5=88.9)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATGGCTTACTCCAACAGCT
R:
CGGAGCCCTCAGAGGCTC
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]