RnoEX0086560 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27374558-27376835:-
Coord C1 exon
chr7:27376716-27376835
Coord A exon
chr7:27375822-27375962
Coord C2 exon
chr7:27374558-27374665
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTGTCTCTCTTAGAGC
3' ss Score
11.01
5' ss Seq
CAAGTATGG
5' ss Score
4.99
Exon sequences
Seq C1 exon
GAGGTGCTGGCTTTTTCCAAGAGCTCAGCCCGAGGACAGGCATTTTTGAAACACCTGACTGACCTGTCCATCCGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGGGAAATAAG
Seq A exon
AGCCTGTCTGGCCGGGACATTGAGCACCACCTCACTAATGTCAACGTCTCCTTTTACAATGACCTTGTCAATGGTACCTTTCTGAGGACTATGCTGGGAAGCCAACTGCTCATTACCTCCAGCCAGGACCAGCTCCACCAA
Seq C2 exon
GAGACCAGGTTTGTGGATGGAAGATCCATTCTGCAGTGGGACATCATCGCCGCCAATGGAATCCTCCATATTATTTCTGAACCTTTGAGAGCTCCTCCCACGGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'85-81,'85-80,86-81
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(32.5=100)
A:
PF0246917=Fasciclin=FE(38.3=100)
C2:
PF0246917=Fasciclin=PD(25.8=86.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGGCTTTTTCCAAG
R:
CTGCCGTGGGAGGAGCTC
Band lengths:
226-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]