HsaEX6068684 @ hg19
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104151948-104155188:+
Coord C1 exon
chr12:104151948-104152067
Coord A exon
chr12:104152911-104153051
Coord C2 exon
chr12:104155078-104155188
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCCTTTTTTCTCAGACC
3' ss Score
10.1
5' ss Seq
CCGGTACAA
5' ss Score
4.28
Exon sequences
Seq C1 exon
GAAGTGCTGGCCTATTCCAACAGCTCAGCTCGAGGCCGTGCATTTCTAGAACACCTGACTGACCTGTCCATCCGCGGCACCCTCTTTGTGCCACAGAACAGTGGGCTGGGGGAGAATGAG
Seq A exon
ACCTTGTCTGGGCGGGACATCGAGCACCACCTCGCCAATGTCAGCATGTTTTTCTACAATGACCTTGTCAATGGCACCACCCTGCAAACGAGGCTGGGAAGCAAGCTGCTCATCACTGCCAGCCAGGACCCACTCCAACCG
Seq C2 exon
ACGGAGACCAGGTTTGTTGATGGAAGAGCCATTCTGCAGTGGGACATCTTTGCCTCCAATGGGATCATTCATGTCATTTCCAGGCCTTTAAAAGCACCCCCTGCCCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'63-64,'63-63,64-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.021 C2=0.027
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(31.4=92.5)
A:
PF0246917=Fasciclin=FE(39.0=100)
C2:
PF0246917=Fasciclin=PD(27.1=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTATTCCAACAGCTC
R:
CAGGGGGTGCTTTTAAAGGCC
Band lengths:
218-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)