Special

DreEX6001324 @ danRer10

Exon Skipping

Gene
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10761123-10763309:+
Coord C1 exon
chr4:10761123-10761239
Coord A exon
chr4:10762838-10762987
Coord C2 exon
chr4:10763061-10763309
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTATGTGTTGACCAGACT
3' ss Score
4.95
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CAAATCCTGAATTTTTCAACATCTGCATCAGGAAAAGCATTCGTGAATCGCCTTCGGAACATCACTATCCAGTCCACTCTGTTTGTACCTGATAACGATGGTCTCTATAGCAACCAG
Seq A exon
ACTTTAAGTGGCAGAGACATAGAGCACCATCTCCTGGATGGGAGGGCTTTAATACTGCAGGCCCTTATTAACGTCACTCATGTCCGAACACGACTGGGCTCCAGTCTGACCATCACCGGTGTGCCTGACCTCCAGAACCCTCAAAAAATG
Seq C2 exon
ACCTCCTCAGGATACATCAACGACCGGTATGTCATAGACTCCAACATTTTTGCATCCAACGGGGTGATCCACGTTCTGCAGGGCCCTCTGAAAGCGCCTCCACCTCCAACTCCCTCCTTCCACCCGGCTCATCAGGCTGGGTTGGGCATCGGCGTCCTGGGGCTCATCATTCTCATCGTAGTGGCTGGATTCGTGGGATACAATTTCTACACACATAAAACAAAGCCATTCCAGTTCCACTATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'78-80,'78-79,81-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.020 C2=0.193
Domain overlap (PFAM):

C1:
PF0246917=Fasciclin=FE(29.7=100)
A:
PF0246917=Fasciclin=FE(38.3=100)
C2:
PF0246917=Fasciclin=PD(24.2=37.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGTGAATCGCCTTCGGA
R:
TGAGAATGATGAGCCCCAGGA
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]