BtaEX6022795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67742705-67745869:+
Coord C1 exon
chr5:67742705-67742764
Coord A exon
chr5:67744037-67744213
Coord C2 exon
chr5:67745780-67745869
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACCAACTCCTTGTGTTTCAGGAC
3' ss Score
10.17
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
CAAAATCTTACGACAGTGGCCATGAACCACGGCTACGGCAAATTTAGCAACTTGATTCAG
Seq A exon
GACTCCGGCTTGCTGAGCGTCATCACAGACCCCATCCACACCCCAGTCACACTTTTCTGGCCCAGCGACCAAGCCCTCCAAGCCCTGCCCCGTGAACAACAGGATTTCCTGTTCAACCAAGACAACAAGGACAAGCTGAAGGAGTACTTAAAGTTCCACGTGATCCGAGATGCCAAG
Seq C2 exon
GTCTTGGCAGTGGATCTCCCCAAATTTGCTCCCTGGAAGACCCTGCAGGGTTCTGAGCTGAGTGTGAAGTGTGGAGCTGGCAGTGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'53-59,'53-58,54-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTACGACAGTGGCCATGA
R:
GATGTCACTGCCAGCTCCAC
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]