MmuEX6050469 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86867148-86870250:-
Coord C1 exon
chr10:86870191-86870250
Coord A exon
chr10:86869022-86869198
Coord C2 exon
chr10:86867148-86867237
Length
177 bp
Sequences
Splice sites
3' ss Seq
GATGGTACCCTGTGTTTCAGGAC
3' ss Score
7.74
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTAAACCTTACTACAGTGGCAGCAAACCATGGATATACCAAATTCAGCAAGTTGATACAG
Seq A exon
GACTCAGGCTTGCTGAAAGTCATCACTGACCCCATGCATACCCCAGTCACTCTCTTCTGGCCTACGGACAAAGCCCTCCAAGCCTTGCCTCAGGAGCAGCAGGACTTCCTGTTCAATGAAGACAACAAAGACAAGCTGAAGGCATACCTGAAGTTCCACGTGATCCGAGATACCATG
Seq C2 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAGGGTTCCGAGCTGAGTGTGAGGTGTGGAACTGGCAGTGATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'71-79,'71-77,72-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(10.4=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTACTACAGTGGCAGCA
R:
ACATCACTGCCAGTTCCACAC
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types