MmuEX6050469 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86329893-86332995:-
Coord C1 exon
chr10:86332936-86332995
Coord A exon
chr10:86331767-86331943
Coord C2 exon
chr10:86329893-86329982
Length
177 bp
Sequences
Splice sites
3' ss Seq
GATGGTACCCTGTGTTTCAGGAC
3' ss Score
7.74
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTAAACCTTACTACAGTGGCAGCAAACCATGGATATACCAAATTCAGCAAGTTGATACAG
Seq A exon
GACTCAGGCTTGCTGAAAGTCATCACTGACCCCATGCATACCCCAGTCACTCTCTTCTGGCCTACGGACAAAGCCCTCCAAGCCTTGCCTCAGGAGCAGCAGGACTTCCTGTTCAATGAAGACAACAAAGACAAGCTGAAGGCATACCTGAAGTTCCACGTGATCCGAGATACCATG
Seq C2 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAGGGTTCCGAGCTGAGTGTGAGGTGTGGAACTGGCAGTGATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'55-60,'55-59,56-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTACTACAGTGGCAGCA
R:
ACATCACTGCCAGTTCCACAC
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: