RnoEX6031005 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27395637-27398721:-
Coord C1 exon
chr7:27398662-27398721
Coord A exon
chr7:27397499-27397675
Coord C2 exon
chr7:27395637-27395726
Length
177 bp
Sequences
Splice sites
3' ss Seq
GACGGTACCCTGTGTTTCAGGAC
3' ss Score
7.83
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAAAATCTTACTACAGTGGCAGCAAACCACGGATATACCAAATTCAGCAAGTTGATACAG
Seq A exon
GACTCAGGCTTGCTGTCAGTCATCACTGACTCCATCCACACCCCAGTCACTGTCTTCTGGCCTACGGACAAAGCCCTGGAAGCCTTGCCCCCAGAGCAGCAGGACTTCCTGTTCAATCAAGACAACAAGGACAAGCTGAAGTCTTACCTGAAGTTCCACGTGATCCGAGACTCCAAG
Seq C2 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAAGGCTCAGAGCTGAGTGTGAGGTGTGGAACTGGCAGTGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'64-64,'64-63,66-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
ENSRNOT00000059538fB14426
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTACTACAGTGGCAGCAAACC
R:
GATGTCACTGCCAGTTCCACA
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]