GgaEX1055784 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56837029-56837887:-
Coord C1 exon
chr1:56837828-56837887
Coord A exon
chr1:56837202-56837378
Coord C2 exon
chr1:56837029-56837118
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAGTATCTTGCACGTTGCAGAAA
3' ss Score
4.19
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAAAGCCTTGAAATGGTTGCAGCCAAACATGGATATGTCCTGTTCAGCAATTTGCTAGAG
Seq A exon
AAAAACAAATTGCTTGGACTGATCCACGATCCCATTCACAAACCTGTGACACTCTTCTGGCCCACGGACACAGCTATCCGCAGGCTGCCCCAGGAGCAGCAGGACTTCCTCTTCAAGAAGTCCAACACAGACAAGCTGGTTCAGTATCTCAAATTCCACATTGTCCGCAATGCTGAG
Seq C2 exon
ATATTAGCCTACCAACTCCCCCGCTCCACCTTGCTGAAGACTCTGCAGGGCTCCAACCTCAGTGTTAGTTGCGAGGATAACAAAGAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTTGAAATGGTTGCAGC
R:
TCTCTTTGTTATCCTCGCAACT
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]