HsaEX6068696 @ hg38
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103731576-103735580:+
Coord C1 exon
chr12:103731576-103731635
Coord A exon
chr12:103733006-103733182
Coord C2 exon
chr12:103735491-103735580
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCCCTGTGTTTCAGGAC
3' ss Score
6.66
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CAAAATCTTACGACTTTGGCAACAAACAATGGCTACATCAAATTTAGCAACTTAATACAG
Seq A exon
GACTCAGGTTTGCTGAGTGTCATCACCGATCCCATCCACACCCCAGTCACTCTCTTCTGGCCCACCGACCAAGCCCTCCATGCCCTACCTGCTGAACAACAGGACTTCCTGTTCAACCAAGACAACAAGGACAAGCTGAAGGAGTATTTGAAGTTTCATGTGATACGAGATGCCAAG
Seq C2 exon
GTTTTAGCTGTGGATCTTCCCACATCCACTGCCTGGAAGACCCTGCAAGGTTCAGAGCTGAGTGTGAAATGTGGAGCTGGCAGGGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'59-83,'59-82,61-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATCTTACGACTTTGGCAAC
R:
TCCCTGCCAGCTCCACATTTC
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains