DreEX6001332 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10754616-10755515:+
Coord C1 exon
chr4:10754616-10754675
Coord A exon
chr4:10755101-10755277
Coord C2 exon
chr4:10755426-10755515
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAAAACTTGTTTGCCTTAAGGAC
3' ss Score
5.62
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
CGTAACTTTTCAGAAGTGGCCAGTGCCAATGGTTTCAAGACATTCTTCAAGCTTCTTGAG
Seq A exon
GACACTGATACATTGAAGTTGGTGATGGACCCGATTCATCAGCCAGTCACACTGTTTATGCCCACGGATGATGCAATGTCTGCTCTGTCTCAAGAGCAGAAAGACTTCCTGTATGCAATGCATAATCGTGATAAACTATCTGAGTATCTCAGATACCACATCCTGCGGGACACCAAG
Seq C2 exon
CTCATGGCTTCAGAACTCATCTACGCCAGCTCTTTGAAAACTCAGCAGGGCTCAGATCTGTCAGTGGCCTGCATGGGGGAAGAGCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'60-60,'60-59,61-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.5=50.0)
A:
PF0246917=Fasciclin=FE(43.6=100)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTCAGAAGTGGCCAGTGC
R:
TATTTGCTCTTCCCCCATGCA
Band lengths:
146-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]