BtaEX6022813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67700616-67705358:+
Coord C1 exon
chr5:67700616-67700730
Coord A exon
chr5:67702921-67702998
Coord C2 exon
chr5:67705260-67705358
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCACTGTGGTGCATTTACAGAAC
3' ss Score
7.49
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTACCATACACTACTGGGCACATACGGAGTGGCCGATCTGCAGGCCCTGTCACCTTCTGACATGCTGGCAACATCTTTGCAGGGCAACTTCCTTCAGCTGGTGAAGGCAGATGGG
Seq A exon
AACATCACAATCGAAGGAGCATCCGTCATTGACGGCGACAATGCAGCCACAAATGGAGTGATACACATCATCAACAAG
Seq C2 exon
GTTCTGATTCCCCAGAGAGGTCTAACTGGCTCCTTACCAAACCTGCTCACCCGACTGGACCAGATGCCTGACTATTCCAGCTTCCGGGGCTACATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'30-35,'30-33,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACTGGGCACATACGGA
R:
AGTCAGGCATCTGGTCCAGTC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]