DreEX6001342 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10744373-10744921:+
Coord C1 exon
chr4:10744373-10744487
Coord A exon
chr4:10744600-10744677
Coord C2 exon
chr4:10744832-10744921
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCTTTTTATTCAGACA
3' ss Score
9.05
5' ss Seq
ACAGTACGA
5' ss Score
3.48
Exon sequences
Seq C1 exon
AAATCACATCCTTTCTGGGAGTTTTACTCTCAGTGATCTTAACACCTCCCCATCCCCACCCCCACGACTGGTTTCCCTTTTGAAAAGGACACTTCCTGTTTACTCGACCAATGAT
Seq A exon
ACAACCATTGTTGCAGGAGGAAAAATTACATTTGGAGATATGGCAGCAAAGAATGGAGTTATACATCTTATTGACACA
Seq C2 exon
GTGCTGATCCCAGAGCAGCAGATGAGTGAAGGTTTACTGCAGGTTTTGAAAAAGAGGTCTGATCTCTCTCTCTTCTATGGCTCTCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=10.0),PF0246917=Fasciclin=PU(8.3=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAACACCTCCCCATCCCC
R:
AAAGAGAGCCATAGAAGAGAGAGAGA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]