HsaEX6068715 @ hg19
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104084202-104089426:+
Coord C1 exon
chr12:104084202-104084316
Coord A exon
chr12:104086590-104086667
Coord C2 exon
chr12:104089328-104089426
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACTGTGGTTTGCATTTACAGAAT
3' ss Score
8.29
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTACCATATGCTACTAGGCACATACAGAGTGGCAGATCTGCAGACCCTGTCTTCTTCTGACATGTTGGCAACATCTTTGCAGGGCAACTTCCTTCACTTGGCAAAGGTGGATGGG
Seq A exon
AATATCACAATTGAAGGGGCCTCCATTGTCGATGGGGACAACGCAGCCACAAATGGAGTGATACACATCATCAACAAG
Seq C2 exon
GTGCTGGTCCCACAAAGACGTCTAACTGGCTCCTTACCAAACCTGCTCATGCGGCTGGAACAGATGCCTGACTATTCCATCTTCCGGGGCTACATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACCCTGTCTTCTTCTGA
R:
TGTAGCCCCGGAAGATGGAAT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)