MmuEX6050454 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86381407-86384941:-
Coord C1 exon
chr10:86384827-86384941
Coord A exon
chr10:86381761-86381838
Coord C2 exon
chr10:86381407-86381614
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTGCACTTTCAGAAT
3' ss Score
9.81
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATACCACACACTACTAGGCACATACAGAGTGGCTGATCTGCAGACTCTGCCATCCTCTCACATGCTAGCGACATCCTTGCAGGGAAGCTTCCTTCGCCTGGACAAGGCAGATGGG
Seq A exon
AATATCACAATTGAGGGGGCATCCTTTGTGGATGGTGACAATGCAGCCACAAACGGGGTGGTCCACATCATCAACAAG
Seq C2 exon
ACTCTCATGGAGACTCTCTTCATTCGATCAGACTTTGCTATAACTCACTCCACCTGTATTTGCAGCGGGGCCTCTGTCATATGTGACCTCACATACATATTCTTTCTTGTATATGCAAATATCTTAAGAGGCACAAGTCTAAAATCAAGAACAAGGGGAAAAGCAATTTGTTATCACTATTTACTCCCCTCCCTGAACTACTGTATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'31-35,'31-34,32-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGGCACATACAGAGTGGCT
R:
CGCTGCAAATACAGGTGGAGT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: