GgaEX1055770 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56854839-56856208:-
Coord C1 exon
chr1:56856094-56856208
Coord A exon
chr1:56855127-56855204
Coord C2 exon
chr1:56854839-56854931
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTTGTCCTTTCAGAAC
3' ss Score
12.67
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTATCATCTATTGACAGGAGCTTACAACTTTGCCGATTTCCAGAATTTATCATCTTCTGATACGCTGCCAACATCCCTACAGAGCAACTTCCTACACTTATCTAAAGAAAATGGG
Seq A exon
AACCTCACTGTCGAGGGTGCTCACATCGTGACTGGTGACATCGCATCCACAAATGGGATCATTCACGTTATTGATAAG
Seq C2 exon
GTTCTGATCCCCCTGCGAAGCACCATCATGCCAAGGCTACTGGCCCGTCTCGAGCAAATGCCTGACTACTCCATTTTCAGGGGCTACATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=9.7),PF0246917=Fasciclin=PU(8.3=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTTACAACTTTGCCGA
R:
AGTCAGGCATTTGCTCGAGAC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]