RnoEX0086549 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27435964-27451227:-
Coord C1 exon
chr7:27451113-27451227
Coord A exon
chr7:27447824-27447901
Coord C2 exon
chr7:27435964-27436062
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTGCACTTGCAGAAC
3' ss Score
10.11
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATACCACATACTACTAGGCAAGTATGGAGTGGCTGATCTGCAGGCCCTGTCATCACCTCACATGCTAGCGACATCCTTGCAGGGAAACTTCCTTCAGCTGGACAAGGCAGATGGG
Seq A exon
AACATCACAATCGAAGGGGCATCCATTGTGGATGGTGACAATGCAGCCACAAACGGGGTGGTCCACATCATCAACAAG
Seq C2 exon
GTGCTGGTCCCCCAAAGAGGCCTAACTGGCTCTTTACCAAGTCTACTCACCCGTCTGGAGCAGATGCCCGGCTATTCCATTTTCCGAGGTTACATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'34-37,'34-35,36-37
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGTATGGAGTGGCTGA
R:
AATGGAATAGCCGGGCATCTG
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]