MmuEX6050454 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86907333-86922196:-
Coord C1 exon
chr10:86922082-86922196
Coord A exon
chr10:86919016-86919093
Coord C2 exon
chr10:86907333-86907431
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTGCACTTTCAGAAT
3' ss Score
9.81
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATACCACACACTACTAGGCACATACAGAGTGGCTGATCTGCAGACTCTGCCATCCTCTCACATGCTAGCGACATCCTTGCAGGGAAGCTTCCTTCGCCTGGACAAGGCAGATGGG
Seq A exon
AATATCACAATTGAGGGGGCATCCTTTGTGGATGGTGACAATGCAGCCACAAACGGGGTGGTCCACATCATCAACAAG
Seq C2 exon
GTGCTAATCCCCCAAAGAGGTCTAACTGGCTCCTTACCCAGTCTACTCACCCGTCTGGAACAGATGCCTGACTATTCCATCTTCCGGGGCTACATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'31-45,'31-42,33-45
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(30.4=100)
A:
PF0246917=Fasciclin=FE(20.0=100)
C2:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCATCCTCTCACATGC
R:
GATGTAGCCCCGGAAGATGGA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types