BtaEX6024825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108792106-108795164:-
Coord C1 exon
chr5:108795083-108795164
Coord A exon
chr5:108793699-108793815
Coord C2 exon
chr5:108792106-108792165
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTGTCTCCTGAACAGAAA
3' ss Score
7.19
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
AGTGAAGCTGTGGGCAGACACCTTTGGCCGGGACCTGTATGACACTGTCACCAAGTACTCGGGCTCCCTCCTGCTGCAGAAG
Seq A exon
AAATACAAGGACGTGGAGTCCAGTCTGAAGATCAAGGAGGTGGACGGCTTGGAGCTGGTGAGGAAGTTCTCAGAGGACATGGAGACCATGCTCCGCAGGAAAGTGGAGGCTGTCCAG
Seq C2 exon
AATCTGGTGGAGGCTGCCGAGGAGGCCGACCTGAACCACGAATTCAACGAGTCCCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083996=VWA_N=PU(12.0=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGTGGGCAGACAC
R:
CCAGGGACTCGTTGAATTCGT
Band lengths:
139-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]