RnoEX6014850 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151300700-151303021:+
Coord C1 exon
chr4:151300700-151300781
Coord A exon
chr4:151302474-151302590
Coord C2 exon
chr4:151302962-151303021
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTCACCCTGCCCAGAAG
3' ss Score
4.75
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGTGAAGCTCTGGGCTGAAACCTTCGGCAGGGATCTGTACAGCACGGTGACCAGATACTCGGGTTCTCTCCTGCTGCAGAAG
Seq A exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCAGAGGACATGGAGACCATGCTTCGGAGGAAAGTTGAGGCTGTGGAG
Seq C2 exon
AGCCTGGTGGAGGCCGCTGAGGAGGCTGACCTGAACCATGAGTTCAATGCGTCTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083996=VWA_N=PU(12.0=70.0)
Main Skipping Isoform:
ENSRNOT00000010746fB2240
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGCTGAAACCTTCG
R:
CACCAGAGACGCATTGAACTCA
Band lengths:
136-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]