DreEX6002505 @ danRer10
Exon Skipping
Gene
ENSDARG00000026855 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20569529-20571846:-
Coord C1 exon
chr4:20571765-20571846
Coord A exon
chr4:20569712-20569828
Coord C2 exon
chr4:20569529-20569588
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCATGTTTGTGCGCCTATAGAAA
3' ss Score
5.57
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGTTCAACAGTGGGCCAATAACTTTGGAAAACAGCTTATGGCCTTATCAAACAGATACTCAGGTGCTCAACTCTTACAAAAG
Seq A exon
AAATATAAAGAAGTGGAACCCATCGTCAAGATGGAGGAGATCGATGGTTTAAAAATGGTGAAGGAATTTGCTGAGGAAATGGAGAACATGCTGGGCAGAAAAATGAAATCAGTTAAG
Seq C2 exon
AGAATGGCAGAGACAGCAGAAGACGCAGATTTTTATCATGAATTTAATGCCACATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026855-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083996=VWA_N=PU(12.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAACAGTGGGCCAATAAC
R:
CATGATAAAAATCTGCGTCTTCTGCT
Band lengths:
122-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]