GgaEX6002678 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61216126-61224342:-
Coord C1 exon
chr1:61224261-61224342
Coord A exon
chr1:61217656-61217772
Coord C2 exon
chr1:61216126-61216185
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTCCCTTGGGCAGAAG
3' ss Score
6.77
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTTAAGTCTTGGGCAGATGCCTTTGGTGGTGAGCTGTACTCAATTGTGACCAAGTACTCAGGCTCTCTCCTATTGCAAAAG
Seq A exon
AAGTACAAAGACGTGGAGCCGACCCTGAAGATCAAAGAGGTGGATGGCCTGGAGCTTGTGAAGAAGTTCTCAGAGCAGATGGAAAGCATGCTCCGCAGGAAGGTGGAAGCTGTTGAG
Seq C2 exon
AGGTTGGTGGAAGCAGCAGAGGATGCAGATCTGAACCATGAGTACAACTCCTCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083996=VWA_N=PU(12.0=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAAGTCTTGGGCAGATGC
R:
GTTGTACTCATGGTTCAGATCTGCA
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]