MmuEX6006569 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119239022-119241212:+
Coord C1 exon
chr6:119239022-119239103
Coord A exon
chr6:119240665-119240781
Coord C2 exon
chr6:119241153-119241212
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCTACCCTGCGCAGAAG
3' ss Score
6.87
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
AGTGAAGCTGTGGGCCGATACCTTCGGCAGGAATCTGTACAACACGGTGACCAGATATTCAGGCTCCCTCCTGCTGCAGAAG
Seq A exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCGGAGGACATGGAGACCATGCTTCGGAGGAAAGTCGAGGCTGTTGAG
Seq C2 exon
AGCCTGGTGGAGGCCGCTGAGGAGGCTGACCTGAATCATGAGTTCAATGCATCTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083996=VWA_N=PU(12.0=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGTGGGCCGATAC
R:
CACCAGAGATGCATTGAACTCA
Band lengths:
141-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types