BtaEX6024847 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108761296-108765680:-
Coord C1 exon
chr5:108765585-108765680
Coord A exon
chr5:108764499-108764626
Coord C2 exon
chr5:108761296-108761376
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCAGGTCTTTTTTCTTGCAGGAG
3' ss Score
8.92
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGAGTCCGAGCAAGTGGTGGACATGGCCTTCCTGGGCACCCGGGCTGGCCTCCTCAGAAGCAGCTTGTTCGTGGGCTCCGAGAAGGTCTCTGACAA
Seq A exon
GAGGTTCCTGACTCCGGCGGACGAGGACAGCATGTTCACCCTGGACCACTTCCCTCTTTGGTACCGCCAGGCCGCAGAGCATCCTCCCGGCAGCATGGTCTTCAACCTCCGCTCGGCAGAAGGACCAG
Seq C2 exon
AAAGTCCCAGCAAGCCTGCGGTGGTGACGGTGAGCACAGCCGTAGCCGTGAGCGTGGACAACAGAACGGCCATCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCCGAGCAAGTGGTG
R:
GATGGCCGTTCTGTTGTCCAC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]