GgaEX1012534 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63167217-63172039:-
Coord C1 exon
chr1:63171944-63172039
Coord A exon
chr1:63170203-63170330
Coord C2 exon
chr1:63167217-63167297
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTTTTCTTCCGGCAGGAA
3' ss Score
11.01
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGAGTCTGAGGCAGGGGTTGAGATGGCATTTCTGGGCACTCGGGCTGGACTCATGAGGAGTGCCCTGTATGTGGGCTCTGAGAAACTTTCCAACAG
Seq A exon
GAAATTCCTGACTCGGAAGGACAAAGAGAGTATCTTCACCATGGACCACTTCCCTCTGTGGTACCGCCGGGCAGCTGAGCATCCCCCCGGGAGCTTCATCTACAGCATCGTTTCAGAAGATGACTCAG
Seq C2 exon
AGGGCGGCGGCCTACCAAAAGTGGTGACAGTTAGCACGGCAGTGGCTGTATCTGTCGATGGGAAGATGGGTATTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGCAGGGGTTGAGATG
R:
GCAGCAATACCCATCTTCCCA
Band lengths:
171-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]