RnoEX0016150 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151367840-151373040:+
Coord C1 exon
chr4:151367840-151367935
Coord A exon
chr4:151369263-151369390
Coord C2 exon
chr4:151372960-151373040
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATCAATCCCACTCTCACAGGAA
3' ss Score
6.8
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AGAGTCAGAGCCTGGTGTGGAAGTGGCCTTTCTGGGGACCCGGGCTGGCCTTCTAAGAAGAAGCTTGTTCGTAGGCTCCGAGAAGGTCTCTGATAG
Seq A exon
GAAGTTCCTGACACCTGAAGATGAAGCCAGTATTTTTACCATGGACCACTTCCCACTGTGGTATCGGCAGGCCTCTGAGCAGCCCCCAGGCAGCTTTGTCTTCAATCTCCGCTGGGCAGAGGGACCAG
Seq C2 exon
ATAGCCCCGGCAAACCAGTGGCGGTAAGGGCCAGCACGGCAATAACTGTGACAGTGGACGGGAAGACGGCCATTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'30-41,'30-37,32-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000010746fB2241
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGAGCCTGGTGTGGAA
R:
CAATGGCCGTCTTCCCGTC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]