GgaEX1012534 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61173305-61178127:-
Coord C1 exon
chr1:61178032-61178127
Coord A exon
chr1:61176291-61176418
Coord C2 exon
chr1:61173305-61173385
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTTTTCTTCCGGCAGGAA
3' ss Score
11.01
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGAGTCTGAGGCAGGGGTTGAGATGGCATTTCTGGGCACTCGGGCTGGACTCATGAGGAGTGCCCTGTATGTGGGCTCTGAGAAACTTTCCAACAG
Seq A exon
GAAATTCCTGACTCGGAAGGACAAAGAGAGTATCTTCACCATGGACCACTTCCCTCTGTGGTACCGCCGGGCAGCTGAGCATCCCCCCGGGAGCTTCATCTACAGCATCGTTTCAGAAGATGACTCAG
Seq C2 exon
AGGGCGGCGGCCTACCAAAAGTGGTGACAGTTAGCACGGCAGTGGCTGTATCTGTCGATGGGAAGATGGGTATTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'26-25,'26-23,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGCAGGGGTTGAGATG
R:
GCAGCAATACCCATCTTCCCA
Band lengths:
171-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]