BtaEX6024850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108737585-108739556:-
Coord C1 exon
chr5:108739495-108739556
Coord A exon
chr5:108737834-108737878
Coord C2 exon
chr5:108737585-108737647
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGCCCTTCCCTCCAGTGT
3' ss Score
9.38
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CCGTGGGCGTCCAGATGAGAATGGAATTCCTGCAGCGCAGCTTCTGGGCTGCCACCCGGCAG
Seq A exon
TGTGGTGCCGCGGAGGGGCCGTGCCCAGAGAGCTGCCAGGACAGT
Seq C2 exon
GACCTGGACTGCTTTGTCGTCGACAACAATGGGTTCATCCTGATCTCTGAGAGGCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGCGTCCAGATGAGAAT
R:
CTCCTGGGGCCTCTCAGAGAT
Band lengths:
124-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]