GgaEX6002699 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61130635-61134071:-
Coord C1 exon
chr1:61134010-61134071
Coord A exon
chr1:61131665-61131709
Coord C2 exon
chr1:61130635-61130697
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTTTTCCTTTCCAGTGC
3' ss Score
11.85
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CGGTGGGCGTGCAAATCAAGCTGGAATTACTCCAACGCAAGTTCTGGATGGCCATGCAGCAG
Seq A exon
TGCAGTGCCTTTGATGGTGCCTGTCCACTCAGCTGTCAGGACGAC
Seq C2 exon
GTTCTGAATTGCTTTCTCATTGATAATAATGGCTTTATCCTCGTTTCCAAAAGACCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'30-34,'30-33,32-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGGCGTGCAAATCAAG
R:
TCTGGAGGTCTTTTGGAAACGA
Band lengths:
124-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]