RnoEX0016155 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151396077-151397798:+
Coord C1 exon
chr4:151396077-151396138
Coord A exon
chr4:151397503-151397547
Coord C2 exon
chr4:151397736-151397798
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCCTTCTCCTTCCAGTGC
3' ss Score
11.47
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCGTGGGCATCCAGATGCAAGCGGACTACCTCCAGCGCCAGTTCTGGGCAGCCATGCAGCAG
Seq A exon
TGCAACACTGTAGAGGGGCCCTGCCCGAAGCGCTGCCAGGACACT
Seq C2 exon
GATCTGGACTGCTTCGTCATAGACAACAATGGCTTCATCCTGATCTCAGAGAGACCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGATGCAAGCGGACTAC
R:
TCTTGGGGTCTCTCTGAGATCA
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]