GgaEX6002699 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63123838-63127814:-
Coord C1 exon
chr1:63127753-63127814
Coord A exon
chr1:63124868-63124912
Coord C2 exon
chr1:63123838-63123900
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTTTTCCTTTCCAGTGC
3' ss Score
11.85
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CGGTGGGCGTGCAAATCAAGCTGGAATTACTCCAACGCAAGTTCTGGATGGCCATGCAGCAG
Seq A exon
TGCAGTGCCTTTGATGGTGCCTGTCCACTCAGCTGTCAGGACGAC
Seq C2 exon
GTTCTGAATTGCTTTCTCATTGATAATAATGGCTTTATCCTCGTTTCCAAAAGACCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'27-29,'27-28,28-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGGCGTGCAAATCAAG
R:
TCTGGAGGTCTTTTGGAAACGA
Band lengths:
124-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]