MmuEX6006545 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119336391-119338177:+
Coord C1 exon
chr6:119336391-119336452
Coord A exon
chr6:119337882-119337926
Coord C2 exon
chr6:119338115-119338177
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCTTCTTCCTTCCAGTGC
3' ss Score
9.94
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGTGGGCATCCAGATGCAAGCAGACTACCTCCAGCGCCAGTTCTGGGCAGCCATGCAGCAG
Seq A exon
TGCAACGCTGTAGAGGGGCCGTGCCTGAAGAGCTGCGAGGACACT
Seq C2 exon
GATCTCGACTGCTTCGTCATAGACAACAATGGCTTCGTCCTGATCTCAGAGAGACCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'46-83,'46-78,54-83=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGCAAGCAGACTACCT
R:
CTCTTGGGGTCTCTCTGAGATCA
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types