Special

BtaEX6025281 @ bosTau6

Exon Skipping

Gene
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112833317-112835828:+
Coord C1 exon
chr5:112833317-112833410
Coord A exon
chr5:112833979-112834116
Coord C2 exon
chr5:112835711-112835828
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTTCACTCCTTCTTAAAGCCC
3' ss Score
6.71
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGGGTTCAACCGTCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAAATTCTCAAAA
Seq A exon
CCCAATGATGAGTGACAATGGCAGTGTGGCCTCTCTGGGTCCTATGCCAACAGCAGCTCAACCATCCAGTACTGGAATTCGGAAGCAATGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTCCACAAACT
Seq C2 exon
CGTTCAAGCCATATTTCCCACTCCGGATCCTGCTGCTTTAAAAGACAGACGGATGGAAAACCTAGTTGCATATGCCCGGAAAGTGGAAGGGGACATGTATGAATCGGCAAACAATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'12-12,'12-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=0.894 C2=0.425
Domain overlap (PFAM):

C1:
NO
A:
PF0217211=KIX=PU(25.9=44.7)
C2:
PF0217211=KIX=FE(48.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTCCTATGGGAGTAAATGGA
R:
TCGATTGTTTGCCGATTCATACA
Band lengths:
211-349
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]