GgaEX1022532 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49664119-49665523:-
Coord C1 exon
chr1:49665430-49665523
Coord A exon
chr1:49664556-49664690
Coord C2 exon
chr1:49664119-49664236
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTACTCTGTTTTTGAAGCTC
3' ss Score
7.23
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
Seq A exon
CTCCATGATGAGTGAAAGCGCCAATGTTGCTAGTCTGGGGGCTATGCCAACAGCTCAGCCATCCAATACAGGAATTCGAAAGCAGTGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCATAAATT
Seq C2 exon
AGTCCAAGCCATATTTCCTACACCTGACCCTGCAGCATTGAAGGATCGGCGTATGGAGAATCTGGTGGCATATGCTCGGAAAGTGGAAGGCGATATGTATGAATCAGCAAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'11-12,'11-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.891 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
PF0217211=KIX=PU(25.9=45.7)
C2:
PF0217211=KIX=FE(48.1=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGGGAGTAAATGGAGGAGT
R:
CCTGCTATTTGCTGATTCATACAT
Band lengths:
205-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]