DreEX0030132 @ danRer10
Exon Skipping
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18825882-18830484:-
Coord C1 exon
chr12:18830379-18830484
Coord A exon
chr12:18829175-18829297
Coord C2 exon
chr12:18825882-18825999
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTCATTTCCCTTTACCCAGTCT
3' ss Score
5.34
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGCGAATTCCATGGGAGTGAATGGGGCAGTTGGTGGCCAGCCTCAGAATCAGCAATCTAGCCTTCTCCAGGATACAATGCTGCATCTGAACATGAATTCACAAAG
Seq A exon
TCTGATAAATGACAGTGGTGTGGGGTCTCTGCCAATGGCCAACCCAGCTGCCAGCGGTAGCATGAGGAAGAGCTGGCATGAGGACATCACCCAGGATCTGCGCAACCACCTGGTACACAAGCT
Seq C2 exon
AGTCCAGGCTATTTTTCCCACACCAGACCCTGCTGCACTGAAAGACCGTCGGATGGAGAATCTAGTGGCCTATGCACGTAAAGTTGAGGGTGACATGTATGAGTCTGCTAACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-'8-11,'8-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.714 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
PF0217211=KIX=PU(25.9=50.0)
C2:
PF0217211=KIX=FE(48.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAATTCCATGGGAGTGA
R:
GCTGTTAGCAGACTCATACATGTCA
Band lengths:
221-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]