Special

GgaEX1022532 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr1:51693152-51694556:-
Coord C1 exon
chr1:51694463-51694556
Coord A exon
chr1:51693589-51693723
Coord C2 exon
chr1:51693152-51693269
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTACTCTGTTTTTGAAGCTC
3' ss Score
7.23
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
Seq A exon
CTCCATGATGAGTGAAAGCGCCAATGTTGCTAGTCTGGGGGCTATGCCAACAGCTCAGCCATCCAATACAGGAATTCGAAAGCAGTGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCATAAATT
Seq C2 exon
AGTCCAAGCCATATTTCCTACACCTGACCCTGCAGCATTGAAGGATCGGCGTATGGAGAATCTGGTGGCATATGCTCGGAAAGTGGAAGGCGATATGTATGAATCAGCAAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=0.891 C2=0.550
Domain overlap (PFAM):

C1:
NO
A:
PF0217211=KIX=PU(25.9=45.7)
C2:
PF0217211=KIX=FE(48.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGGGAGTAAATGGAGGAGT
R:
CCTGCTATTTGCTGATTCATACAT
Band lengths:
205-340
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]