HsaEX6026985 @ hg19
Exon Skipping
Gene
ENSG00000100393 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:3373]
Coordinates
chr22:41531817-41536261:+
Coord C1 exon
chr22:41531817-41531910
Coord A exon
chr22:41533657-41533794
Coord C2 exon
chr22:41536144-41536261
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGGTGACCCCTTTTTGAAGCCC
3' ss Score
4.35
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAGTTCAAACGCCGAGTCTTCTTTCTGACTCAATGTTGCATTCAGCCATAAATTCTCAAAA
Seq A exon
CCCAATGATGAGTGAAAATGCCAGTGTGCCCTCCCTGGGTCCTATGCCAACAGCAGCTCAACCATCCACTACTGGAATTCGGAAACAGTGGCACGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCACAAACT
Seq C2 exon
CGTCCAAGCCATATTTCCTACGCCGGATCCTGCTGCTTTAAAAGACAGACGGATGGAAAACCTAGTTGCATATGCTCGGAAAGTTGAAGGGGACATGTATGAATCTGCAAACAATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100393-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.894 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF0217211=KIX=PU(25.9=44.7)
C2:
PF0217211=KIX=FE(48.1=100),PF068866=TPX2=PU(13.2=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTCCTATGGGAGTAAATGGA
R:
TCGATTGTTTGCAGATTCATACATGT
Band lengths:
211-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)