RnoEX0003431 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122852256-122856330:+
Coord C1 exon
chr7:122852256-122852349
Coord A exon
chr7:122852896-122853033
Coord C2 exon
chr7:122856213-122856330
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTATTTTTCAAGCCC
3' ss Score
6.93
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCCAGTCCTATGGGTGTAAATGGAGGTGTAGGGGTTCAGACACCGAATCTTCTTTCTGACTCCATGTTGCATTCAACCATAAATTCTCAGAA
Seq A exon
CCCAATGATGAATGAAAATGCCAGTGTGGCCTCTCTGGGTCCTTTGCCCACAGCAGCCCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
Seq C2 exon
TGTTCAAGCCATATTTCCCACTCCCGATCCTGCTGCTTTAAAAGACCGACGGATGGAAAACCTTGTTGCATATGCTCGTAAAGTAGAAGGGGACATGTATGAATCTGCAAACAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.894 C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
PF0217211=KIX=PU(25.9=44.7)
C2:
PF0217211=KIX=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGTCCTATGGGTGTAA
R:
TATTGTTTGCAGATTCATACATGTCC
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]