DreEX6016515 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24902961-24906069:-
Coord C1 exon
chr3:24905964-24906069
Coord A exon
chr3:24905751-24905882
Coord C2 exon
chr3:24902961-24903078
Length
132 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTCTGTGTCTTGTAGCTT
3' ss Score
7.49
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGGGAACTCAATGGGAGTGAATGGAGGAGTCGGTGCGCCGATGTCAAACCAGCATCCAGGAATGCTGCCCGATGGCATGCTGCACAGGAACATGACCGCTCAGAG
Seq A exon
CTTGATGAATGACAGCTCTGGTGTTGGTAACATGGGCTCTGCTGCGACCGCTACACCGCCCTCTGCTGGAATGAGGAAGAGCTGGCATGAAGACATCACACAGGACCTCCGCAATCACCTTGTACACAAACT
Seq C2 exon
TGTACAGGCCATCTTCCCGACTCCAGACCCTGCAGCGCTGAAGGACAGGCGGATGGAAAACCTTGTAGCTTATGCACGGAAAGTGGAGGGCGACATGTACGAATCTGCAAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'6-11,'6-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
PF0217211=KIX=PU(25.9=46.7)
C2:
PF0217211=KIX=FE(48.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAATGGGAGTGAATGGAGGA
R:
TTTGCAGATTCGTACATGTCGC
Band lengths:
210-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]