MmuEX0016953 @ mm10
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81616032-81620117:+
Coord C1 exon
chr15:81616032-81616125
Coord A exon
chr15:81616726-81616863
Coord C2 exon
chr15:81620000-81620117
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCGATTTCTAAAGCCC
3' ss Score
6.25
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCTAGTCCTATGGGTGTAAATGGAGGTGTTGGGGTTCAGACGCCAAATCTTCTTTCTGACTCCATGTTGCATTCAACTATAAATTCTCAAAA
Seq A exon
CCCAATGATGAGTGAAAATGCTGGTGTGGCCTCCCTGGGTCCTTTGCCAACAGCAGCTCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
Seq C2 exon
TGTTCAAGCCATATTTCCCACTCCGGATCCTGCTGCTTTAAAAGACCGACGGATGGAAAATCTTGTTGCATATGCTCGTAAAGTGGAAGGGGACATGTATGAATCTGCAAACAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.894 C2=0.669
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(11.6=25.0)
A:
PF0217211=KIX=PU(25.9=44.7)
C2:
PF0217211=KIX=FE(56.5=100),PF068866=TPX2=PU(13.2=12.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTAGTCCTATGGGTGTAAATGG
R:
TATTGTTTGCAGATTCATACATGTCC
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types