BtaEX6025473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114692769-114720803:-
Coord C1 exon
chr5:114720669-114720803
Coord A exon
chr5:114696945-114697070
Coord C2 exon
chr5:114692769-114692885
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTCGTCTGTCTCTTCCCAGAGG
3' ss Score
10.99
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTCAGGACAACAACGGCGGCTGCCAGCAGATCTGCGTCAACGCCATGGGCAGCTACGAGTGTCAGTGCCACAGCGGCTTTTTCCTCAGCGACAACCAGCACACCTGCATCCACCGCTCCAGCG
Seq A exon
AGGGTATGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTGGCCTGCGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACAC
Seq C2 exon
TAACCTGTAACTATGGGAACGGAGGCTGCCAGCACAGCTGTGAGGACACGGACACGGGCCCCACGTGCGGCTGCCACCAGAAGTACGCCCTGCACTCAGACGGCCGGACGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGTCAGGACAACAACG
R:
CACGTCCGGCCGTCTGAG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]