DreEX0064623 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8950687-8974878:-
Coord C1 exon
chr4:8974744-8974878
Coord A exon
chr4:8955150-8955275
Coord C2 exon
chr4:8950687-8950803
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTCTTTCGGCAGATG
3' ss Score
11.48
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACG
Seq A exon
ATGGGATGAACTGTATGAATAAGGACCACGGTTGTGCCCATATCTGCAGAGAAATTACCAAAGGCGGAGTGGCGTGTGAGTGCCGGCCAGGGTTTGAGCTGGCCGAAAATCAGCGCGACTGCAAAT
Seq C2 exon
TGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAATGTCTGGACAACAACG
R:
CAGGTCTTGCTGTCTGAATGCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]